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Top AI Repos tracks AI repositories on GitHub and answers two different questions about each one: is it moving right now, and would you bet a product on it.
BioMate external connector interfaces — Claude, Claude Code, ChatGPT, Slack, WeChat
| Date | Stars |
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| 2026-07-31 | 386 |
| 2026-08-06 | 499 |
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| 2026-09-20 | 783 |
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# BioMate Connector Connect BioMate to the AI tools you already use — Claude Code, Claude Desktop, Cursor, Codex, ChatGPT, Slack, and WeChat — and run real bioinformatics pipelines without leaving your chat window. Also connect your lab instruments (Illumina, Nanopore, CryoEM, LC-MS, and more) so data flows automatically into the right pipeline the moment a run finishes. ``` > Screen aspirin and caffeine for hERG inhibition and CYP3A4 metabolism. > Run RNA-seq differential expression on s3://my-bucket/fastqs/, treated vs control. > Refine this cryo-EM stack with CryoSPARC homogeneous refinement, C2 symmetry. ``` BioMate finds the right pipeline from 2,455 indexed workflows, fills the parameters, launches on BioMate cloud, and streams live progress back to your assistant. No copy-pasting commands. No waiting for a dashboard to refresh. ## Architecture  ## Information Flow  --- ## Get started in 30 seconds ```bash npx @biomate/connect claude-code ``` Pick your surface, authenticate once via your browser, and you're done. The CLI writes the MCP config for you and stores your token in the OS keychain. | Surface | Command | |---|---| | Claude Code | `npx @biomate/connect claude-code` | | Claude Desktop | `npx @biomate/connect claude-desktop` | | Cursor | `npx @biomate/connect cursor` | | Codex CLI | `npx @biomate/connect codex` | | ChatGPT | See [`connectors/chatgpt/INSTALL.md`](connectors/chatgpt/INSTALL.md) | | Slack | See [`connectors/slack/README.md`](connectors/slack/README.md) | | WeChat / Open Claw | `npx @biomate/connect open-claw` | --- ## What's in this repo ``` connectors/ Per-surface install guides, MCP config snippets, and the @biomate/connect CLI lab_instruments/ Lab instrument connectors (Illumina, Nanopore, CryoEM, LC-MS, and 6 more) oauth_server/ OAuth 2.1 + PKCE authorization server (self-hostable) mcp/ Shared MCP tools manifest and server — the single source of truth for all surfaces skills/biomate/ Claude Skill bundle for the Anthropic Skills gallery tests/ Connector test suites (offline sandbox + live API + 68 lab instrument checks) ``` --- ## Lab Instrument Connectors Connect physical instruments so raw data is routed automatically to the right BioMate workflow the moment a run finishes — no manual upload, no copy-pasting paths. | Instrument | File | Trigger | |-----------|------|---------| | **Illumina BaseSpace** | `lab_instruments/illumina_basespace_connector.py` | New run via BaseSpace API | | **Oxford Nanopore MinKNOW** | `lab_instruments/nanopore_minknow_connector.py` | Run complete via MinKNOW HTTP API | | **CryoEM EPU** | `lab_instruments/cryoem_instrument_connector.py` | New `.mrc`/`.mrcs` micrographs in output dir | | **LC-MS** | `lab_instruments/lcms_connector.py` | New `.raw`/`.d`/`.wiff` files (Thermo, Bruker, Waters, SCIEX) | | **Flow Cytometer** | `lab_instruments/flow_cytometer_connector.py` | New `.fcs` files (BD, Beckman, Sony) | | **qPCR** | `lab_instruments/qpcr_connector.py` | New `.eds` (QuantStudio) or `.pcrd` (Bio-Rad CFX) | | **Plate Reader** | `lab_instruments/plate_reader_connector.py` | New `.xlsx` exports (BioTek, Molecular Devices) | | **Opentrons OT-2/Flex** | `lab_instruments/opentrons_connector.py` | Protocol complete via robot HTTP API | | **Benchling ELN** | `lab_instruments/benchling_connector.py` | New entry or assay result via Benchling API | | **SiLA2 devices** | `lab_instruments/sila2_adapter.py` | gRPC events (Hamilton, Sartorius, etc.) | Quick start — copy `config.example.yaml` (in `lab_instruments/`), fill in your instrument details, and run: ```bash pip install -r requirements.txt python3 lab_instruments/instrument_watcher.py --config config.yaml ``` --- ## The tools your assistant gets BioMate exposes **17 tools** across three tiers. ### Lite set (consumer surfaces — Claude.ai, ChatGPT GPT, Slack) | Tool | What it
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Would you bet a product on this? Bounded 0–100 and slow moving.
matched fp:0adacd2ab90cf9f0, name:connector, desc:connector